Software

Developer

apeglm

• Bayesian shrinkage estimators for effect sizes for a variety of generalized linear models.
  Collaboration with Dr. Michael Love and Dr. Joseph Ibrahim (UNC-CH).
  apeglm methods can be accessed via lfcShrink in the DESeq2 package.

Contributor

fishpond

• Nonparametric testing procedures for differential transcript and gene analysis for a collection of experiment designs making use of inferential replicate counts. Mainly developed by Dr. Michael Love, and in collaboration with Dr. Joseph Ibrahim (UNC-CH), and Avi Srivastava and Dr. Rob Patro (UMD).

MRLocus

• Bayesian estimation of the gene-to-trait effect and credible interval from GWAS and eQTL summary statistics for a single loci where harbors multiple independent signals from both studies. Developed by Dr. Michael Love, and in collaboration with Dr. Nana Matoba, and Dr. Jason Stein (UNC-CH).